WABI 2019 Accepted Papers

• Jesper Jansson, Konstantinos Mampentzidis, and Sandhya Thekkumpadan Puthiyaveedu.
  Building a Small and Informative Phylogenetic Supertree
• Roland Wittler.
  Alignment- and reference-free phylogenomics with colored de-Bruijn graphs
• Nathan Clement.
  Quantified uncertainty of the flexible protein-protein docking algorithm
• Sarah Christensen, Erin Molloy, Pranjal Vachaspati, and Tandy Warnow.
  TRACTION: Fast non-parametric improvement of estimated gene trees
• Kohei Yamada, Zhi-Zhong Chen, and Lusheng Wang.
  Better Practical Algorithms for rSPR Distance and Hybridization Number
• Georgi D. Georgiev, Kevin F. Dodd and Brian Y. Chen.
  pClay: A Precise Parallel Algorithm for Comparing Molecular Surfaces
• Kavya Vaddadi, Rajgopal Srinivasan, and Naveen Sivadasan.
  Read Mapping on Genome Variation Graphs
• Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, and Jens Stoye.
  Finding all maximal perfect haplotype blocks in linear time
• Roni Zoller, Meirav Zehavi, and Michal Ziv-Ukelson.
  A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation
• Jie Liu, Yuanhao Huang, Ritambhara Singh, Jean-Philippe Vert, and William Stafford Noble.
  Jointly embedding multiple single-cell omics measurements
• Alexandra Gesine Cauer, Grkan Yardımci, Jean-Philippe Vert, Nelle Varoquaux, and William Stafford Noble.
  Inferring diploid 3D chromatin structures from Hi-C data
• Alexey Markin and Oliver Eulenstein.
  Consensus Clusters in Robinson-Foulds Reticulation Networks
• Pijus Simonaitis, Annie Chateau, and Krister M. Swenson.
  Weighted Minimum-length Rearrangement Scenarios
• Milad Miladi, Martin Raden, Sebastian Will, and Rolf Backofen.
  Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs
• Hongyi Xin, Mingfu Shao, and Carl Kingsford.
  Context-Aware Seeds for Read Mapping
• Alexander Tiskin.
  Bounded-length Smith - Waterman alignment
• Chirag Jain, Haowen Zhang, Alexander Dilthey, and Srinivas Aluru.
  Validating Paired-end Read Alignments in Sequence Graphs
• Yutong Qiu, Cong Ma, Han Xie, and Carl Kingsford.
  Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem
• Qi Wang, R. A. Leo Elworth, Tian Rui Liu, and Todd J. Treangen.
  Faster pan-genome construction for efficient differentiation of naturally occurring and engineered plasmids with plaster
• Jakub Truszkowski, Olivier Gascuel, and Krister M. Swenson.
  Rapidly Computing the Phylogenetic Transfer Index
• Zhen Cao, Jiafan Zhu, and Luay Nakhleh.
  Empirical Performance of Tree-based Inference of Phylogenetic Networks
• Mohammadamin Edrisi, Hamim Zafar, and Luay Nakhleh.
  A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference
• Natalie Sauerwald, Yihang Shen, and Carl Kingsford.
  Topological data analysis reveals principles of chromosome structure in cellular differentiation
• Evgeny Polevikov and Mikhail Kolmogorov.
  Synteny paths for assembly graphs comparison